miRBase entry: cpi-mir-18a

Stem-loop cpi-mir-18a


Accession
MI0029402
Description
Chrysemys picta cpi-mir-18a precursor miRNA


Sequence

ugcuuuuuguucUAAGGUGCAUCUAGUGCAGAuagugaaguagauuagcaucuACUGCCCUAAGUGCUCCUUCUGgcauaagaaguuau
.(((((((((.((((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).)))..))).)))))))))...

Structure
--u         u   --   U    C   U    A   -  aa u 
   gcuuuuugu cUA  AGG GCAU UAG GCAG uag ug  g a
   ||||||||| |||  ||| |||| ||| |||| ||| ||  | g
   ugaagaaua gGU  UCC CGUG AUC CGUC Auc ac  u a
uau         c   CU   U    A   C    -   u  ga u 


Annotation confidence Not enough data
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Genome context
KK083096.1: 1397132-1397220 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cpi-mir-18a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-18a-5p

Accession MIMAT0037638
Description Chrysemys picta cpi-miR-18a-5p mature miRNA
Sequence 13 - UAAGGUGCAUCUAGUGCAGA - 32
Evidence experimental
Illumina [1]

Mature cpi-miR-18a-3p

Accession MIMAT0037639
Description Chrysemys picta cpi-miR-18a-3p mature miRNA
Sequence 54 - ACUGCCCUAAGUGCUCCUUCUG - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196