miRBase entry: cpi-mir-10c

Stem-loop cpi-mir-10c


Accession
MI0029397
Description
Chrysemys picta cpi-mir-10c precursor miRNA


Sequence

auacagucgucuauauguACCCUGUAGAAUCGAAUUUGUGugaauauuugagagucaCAAAUUCGUCUCUAGGGGAGUauauggacgaugccagagc
.....(((((((((..(((((((.((((..((((((((((...............))))))))))..)))).))).)))))))))))))........

Structure
---auaca         au    -   G    AU          ugaaua 
        gucgucuau  guAC CCU UAGA  CGAAUUUGUG      u
        |||||||||  |||| ||| ||||  ||||||||||      u
        uagcaggua  uaUG GGG AUCU  GCUUAAACac      u
cgagaccg         --    A   G    CU          ugagag 


Annotation confidence Not enough data
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Genome context
KK083067.1: 969489-969585 [-]

Database links

Mature cpi-miR-10c-5p

Accession MIMAT0037629
Description Chrysemys picta cpi-miR-10c-5p mature miRNA
Sequence 19 - ACCCUGUAGAAUCGAAUUUGUG - 40
Evidence experimental
Illumina [1]

Mature cpi-miR-10c-3p

Accession MIMAT0037630
Description Chrysemys picta cpi-miR-10c-3p mature miRNA
Sequence 58 - CAAAUUCGUCUCUAGGGGAGU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196