miRBase entry: cpi-let-7f-2

Stem-loop cpi-let-7f-2

Accession

MI0029381

Description

Chrysemys picta cpi-let-7f-2 precursor miRNA

Sequence

gcggagUGAGGUAGUAGAUUGUAUAGUUguaggguaguuauuuuacccuguucaggagauaaCUAUACAAUCUAUUGCCUUCCccgag
.(((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).))))..

Structure

-g   a U                       ---------       u 
  cgg g GAGGUAGUAGAUUGUAUAGUUgu         aggguag u
  ||| | |||||||||||||||||||||||         ||||||| a
  gcc C UUCCGUUAUCUAACAUAUCaaua         ucccauu u
ga   - C                       gaggacuug       u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

KK088242.1: 1330625-1330712 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-let-7f-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-let-7f-5p

Accession	MIMAT0037606
Description	Chrysemys picta cpi-let-7f-5p mature miRNA
Sequence	7 - UGAGGUAGUAGAUUGUAUAGUU - 28
Evidence	experimental Illumina [1]

Mature cpi-let-7f-3p

Accession	MIMAT0037607
Description	Chrysemys picta cpi-let-7f-3p mature miRNA
Sequence	63 - CUAUACAAUCUAUUGCCUUCC - 83
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196