miRBase entry: cpi-let-7b

Stem-loop cpi-let-7b

Accession

MI0029375

Description

Chrysemys picta cpi-let-7b precursor miRNA

Sequence

gcucuagcagggUGAGGUAGUAGGUUGUGUGGUUucaggguagugauuuugccccaaucaggagauaacuauacaaccuacugccuucccug
.......(((((.(((((((((((((((((((((...((((((.....))))))..(((....)))))))))))))))))))))))))))))

Structure

gcucuag     U                     ---------uca      u 
       caggg GAGGUAGUAGGUUGUGUGGUU            ggguag g
       ||||| |||||||||||||||||||||            |||||| a
       guccc uuccgucauccaacauaucaa            cccguu u
-------     -                     uagaggacuaac      u

Annotation confidence Not enough data

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Genome context

KK088200.1: 3678396-3678487 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-let-7b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-let-7b-5p

Accession	MIMAT0037598
Description	Chrysemys picta cpi-let-7b-5p mature miRNA
Sequence	13 - UGAGGUAGUAGGUUGUGUGGUU - 34
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196