miRBase entry: xtr-mir-454

Stem-loop xtr-mir-454


Accession
MI0029367
Description
Xenopus tropicalis xtr-mir-454 precursor miRNA


Sequence

agugcccucagccuuaaggaagugacccuaucaauauugccucugcuuuugugcucggaguagUAGUGCAAUAUUGCUUAUAGGGUcuuuuccuugagacacc
............((((((((((.((((((((((((((((((((((((((.......))))))).)).)))))))))...)))))))).)))))))))).....

Structure
agugcccucagc          u        ---         -  -       ug 
            cuuaaggaag gacccuau   caauauugc cu cugcuuu  u
            |||||||||| ||||||||   ||||||||| || |||||||  g
            gaguuccuuu cUGGGAUA   GUUAUAACG GA gaugagg  c
-------ccaca          u        UUC         U  U       cu 


Annotation confidence Not enough data
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Genome context
chr1: 145396839-145396941 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from xtr-mir-454
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xtr-miR-454-3p

Accession MIMAT0037590
Description Xenopus tropicalis xtr-miR-454-3p mature miRNA
Sequence 64 - UAGUGCAAUAUUGCUUAUAGGGU - 86
Evidence not_experimental

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196