Stem-loop sequence xtr-mir-454

Accession

MI0029367 (change log)

Description

Xenopus tropicalis miR-454 stem-loop

Stem-loop

   agugcccuca c          u        ---         -  -       ug 
5'           g cuuaaggaag gacccuau   caauauugc cu cugcuuu  u
             | |||||||||| ||||||||   ||||||||| || |||||||  g
3'           c gaguuccuuu cugggaua   guuauaacg ga gaugagg  c
   -------cca a          u        uuc         u  u       cu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Xenopus_tropicalis_v9.1; GCA_000004195.3): chr1: 145396839-145396941 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from xtr-mir-454

• xtr-mir-130c: chr1: 145403553-145403623 [-]
• xtr-mir-301-2: chr1: 145402708-145402780 [-]
• xtr-mir-454: chr1: 145396839-145396941 [-]
• xtr-mir-130b: chr1: 145394707-145394782 [-]

Database links

• miRBase Tracker:MI0029367

Mature sequence xtr-miR-454-3p

• Accession: MIMAT0037590
• Sequence: 64 - uagugcaauauugcuuauagggu - 86
• Evidence: not experimental

References

1. PMID:24798503 "Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles" Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ Evol Dev. 16:189-196(2014).