miRBase entry: aca-mir-30c-2

Stem-loop aca-mir-30c-2


Accession
MI0029351
Description
Anolis carolinensis aca-mir-30c-2 precursor miRNA


Sequence

uagcagcgcaUGUAAACAUCCUACACUCUCAGCugugaauuugugguggCUGGGAGAAGGUUGUUUACACcuucu
..........((((((((.(((...(((((((((((.(.....).))))))))))).))).))))))))......

Structure
uagcagcgca        U   ACA           g a 
          UGUAAACA CCU   CUCUCAGCugu a u
          |||||||| |||   ||||||||||| | u
          ACAUUUGU GGA   GAGGGUCggug u u
----ucuucC        U   --A           g g 


Annotation confidence Not enough data
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Genome context
GL343308.1: 254244-254318 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-30c-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-30c-5p

Accession MIMAT0021924
Description Anolis carolinensis aca-miR-30c-5p mature miRNA
Sequence 11 - UGUAAACAUCCUACACUCUCAGC - 33
Evidence experimental
Illumina [1]

Mature aca-miR-30c-2-3p

Accession MIMAT0037563
Description Anolis carolinensis aca-miR-30c-2-3p mature miRNA
Sequence 50 - CUGGGAGAAGGUUGUUUACAC - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196