miRBase entry: gga-mir-1388a

Stem-loop gga-mir-1388a


Accession
MI0029345
Description
Gallus gallus gga-mir-1388a precursor miRNA

Literature search
1 open access papers mention gga-mir-1388a
(1 sentences)

Sequence

37855 reads, 518 reads per million, 5 experiments
gcgaggggcaccucgAGGACUGUCUAACCUGAGAAUGgugaaacaugagggucaAUCUCAGGUUCGUCAGCCCAUGagaugccuucuc
..((((((((.((((.((.(((.(.(((((((((....(((..(....)..))).))))))))).).))).)).)))).)))).))))

Structure
gc    -    c    A  A   U U         AUGg   aa a 
  gagg ggca cucg GG CUG C AACCUGAGA    uga  c u
  |||| |||| |||| || ||| | |||||||||    |||  |  
  cucu ccgu gaGU CC GAC G UUGGACUCU    acu  g g
--    u    a    A  C   U C         ---A   gg a 


Annotation confidence High
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Genome context
chr20: 9710454-9710541 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-1388a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-1388a-5p

Accession MIMAT0037555
Description Gallus gallus gga-miR-1388a-5p mature miRNA
Sequence 16 - AGGACUGUCUAACCUGAGAAUG - 37
Evidence experimental
Illumina [2]

Mature gga-miR-1388a-3p

Accession MIMAT0037556
Description Gallus gallus gga-miR-1388a-3p mature miRNA
Sequence 55 - AUCUCAGGUUCGUCAGCCCAUG - 76
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196

  2. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973