Stem-loop sequence gga-mir-363

Accession

MI0029344 (change log)

Description

Gallus gallus miR-363 stem-loop

Stem-loop

   guaagcuuu       u   gu         ca  a         ga  aguu 
5'          guuuugc guu  cggguggau  cg ugcaauuuu  uu    u
            ||||||| |||  |||||||||  || |||||||||  ||     
3'          cagaacg caa  gucuaccua  gc acguuaaaa  ag    a
   gccuacuuc       c   au         ug  -         ag  gaug 

Deep sequencing

62650 reads, 1.42e+03 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr4: 3994409-3994515 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-363

• gga-mir-106: chr4: 3995151-3995231 [-]
• gga-mir-18b: chr4: 3995020-3995103 [-]
• gga-mir-20b: chr4: 3994839-3994923 [-]
• gga-mir-19b-2: chr4: 3994707-3994789 [-]
• gga-mir-92-2: chr4: 3994560-3994640 [-]
• gga-mir-363: chr4: 3994409-3994515 [-]

Database links

• miRBase Tracker:MI0029344

Mature sequence gga-miR-363-5p

• Accession: MIMAT0037553
• Sequence: 26 - guggaucacgaugcaauuuuga - 47
• Deep sequencing: 1336 reads, 5 experiments
• Evidence: experimental; Illumina [2]

Mature sequence gga-miR-363-3p

• Accession: MIMAT0037554
• Sequence: 66 - aauugcacgguauccaucuguaa - 88
• Deep sequencing: 61309 reads, 5 experiments
• Evidence: experimental; Illumina [2]

References

1. PMID:24798503 "Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles" Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ Evol Dev. 16:189-196(2014).
2. PMID:29079676 "Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation" Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H Genome Res. [Epub prior to print](2017).