Stem-loop sequence gga-mir-338

AccessionMI0029343 (change log)
DescriptionGallus gallus miR-338 stem-loop
Literature search

1 open access papers mention gga-mir-338
(1 sentences)

Stem-loop 
        u   g  -      u   -         agu    ug a 
5' gcucc ccu cc caacaa auc cuggugcug   gagu  c c
   ||||| ||| || |||||| ||| |||||||||   ||||  | a
3' cgagg gga gg guuguu uag gacuacgac   cuca  g c
        -   a  a      u   u         ---    ga a
Get sequence
Deep sequencing
184922 reads, 1.66e+03 reads per million, 5 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Gallus_gallus-5.0; GCA_000002315.3) Overlapping transcripts
chr18: 9383522-9383606 [+]
intergenic
Database links

Mature sequence gga-miR-338-5p

Accession MIMAT0037551
Sequence

14 -  

aacaauauccuggugcugagu

 - 34

Get sequence
Deep sequencing35284 reads, 5 experiments
Evidence experimental; Illumina [2]

Mature sequence gga-miR-338-3p

Accession MIMAT0037552
Sequence

52 -  

uccagcaucagugauuuuguuga

 - 74

Get sequence
Deep sequencing149637 reads, 5 experiments
Evidence experimental; Illumina [2]

References

1
PMID:24798503 "Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles" Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ Evol Dev. 16:189-196(2014).
2
PMID:29079676 "Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation" Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H Genome Res. [Epub prior to print](2017).