miRBase entry: gga-mir-182

Stem-loop gga-mir-182


Accession
MI0029339
Description
Gallus gallus gga-mir-182 precursor miRNA

Literature search
5 open access papers mention gga-mir-182
(43 sentences)

Sequence

13429 reads, 172 reads per million, 5 experiments
ggcugcuUUUGGCAAUGGUAGAACUCACACUGgugcgcucgcaggauccggUGGUUCUAGACUUGCCAACuacagccccggg
(((((...(((((((...((((((...((((((..(........)..))))))))))))...)))))))...))))).....

Structure
-----     cuU       UGG      UCA      ug gcu 
     ggcug   UUGGCAA   UAGAAC   CACUGg  c   c
     |||||   |||||||   ||||||   ||||||  |    
     ccgac   AACCGUU   AUCUUG   GUggcc  g   g
gggcc     auC       CAG      ---      ua gac 


Annotation confidence Not enough data
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Genome context
chr1: 843232-843313 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from gga-mir-182
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-182-5p

Accession MIMAT0037544
Description Gallus gallus gga-miR-182-5p mature miRNA
Sequence 8 - UUUGGCAAUGGUAGAACUCACACUG - 32
Evidence experimental
Illumina [2]

Mature gga-miR-182-3p

Accession MIMAT0037545
Description Gallus gallus gga-miR-182-3p mature miRNA
Sequence 52 - UGGUUCUAGACUUGCCAAC - 70
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196

  2. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973