miRBase entry: gga-mir-145

Stem-loop gga-mir-145


Accession
MI0029338
Description
Gallus gallus gga-mir-145 precursor miRNA

Literature search
5 open access papers mention gga-mir-145
(26 sentences)

Sequence

13907 reads, 240 reads per million, 5 experiments
cgugcucucaggGUCCAGUUUUCCCAGGAAUCCCUUaggcgcuacguuggggAUUCCUGGAAAUACUGUUCUUggggccacggcu
((((.((((((((..((((.((.((((((((((((..((((...)))))))))))))))).)).)))).)))))))).))))...

Structure
---    c        UC    U  C            Ua    c 
   cgug ucucaggG  CAGU UU CCAGGAAUCCCU  ggcg  
   |||| ||||||||  |||| || ||||||||||||  |||| u
   gcac ggggUUCU  GUCA AA GGUCCUUAgggg  uugc  
ucg    c        -U    U  A            --    a 


Annotation confidence Not enough data
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Genome context
chr13: 8492485-8492569 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-145
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-145-5p

Accession MIMAT0037542
Description Gallus gallus gga-miR-145-5p mature miRNA
Sequence 13 - GUCCAGUUUUCCCAGGAAUCCCUU - 36
Evidence experimental
Illumina [2]

Mature gga-miR-145-3p

Accession MIMAT0037543
Description Gallus gallus gga-miR-145-3p mature miRNA
Sequence 53 - AUUCCUGGAAAUACUGUUCUU - 73
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196

  2. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973