miRBase entry: gga-mir-19b-2

Stem-loop gga-mir-19b-2


Accession
MI0029332
Description
Gallus gallus gga-mir-19b-2 precursor miRNA

Literature search
3 open access papers mention gga-mir-19b-2
(10 sentences)

Sequence

4619 reads, 125 reads per million, 5 experiments
gcugcucacagucaguuuugcagguuugcaucccagcuugcuaaaauugcUGUGCAAAUCCAUGCAAAACUGAcugugguggu
(((((.((((((((((((((((((((((((...((((...........)))))))))).)).)))))))))))))))))))))

Structure
     u                -  -      ucc    uugc 
gcugc cacagucaguuuugca gg uuugca   cagc    u
||||| |||||||||||||||| || ||||||   ||||    a
uggug gugucAGUCAAAACGU CC AAACGU   GUcg    a
     -                A  U      ---    uuaa 


Annotation confidence Not enough data
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Genome context
chr4: 3994707-3994789 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from gga-mir-19b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-19b-3p

Accession MIMAT0001110
Description Gallus gallus gga-miR-19b-3p mature miRNA
Sequence 51 - UGUGCAAAUCCAUGCAAAACUGA - 73
Evidence experimental
cloned [2], Illumina [3]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196