Stem-loop sequence gga-mir-9-3

Accession

MI0029331 (change log)

Description

Gallus gallus miR-9-3 stem-loop

Literature search

19 open access papers mention gga-mir-9-3
(327 sentences)

Stem-loop

   a   a        uc               g     gu   g 
5'  ggg uguuucug  uuugguuaucuagcu uauga  guu u
    ||| ||||||||  ||||||||||||||| |||||  |||  
3'  uuc guaaagau  aagccaauagaucga auacu  cga g
   c   a        ga               a     ac   g 

Deep sequencing

6238341 reads, 6.35e+04 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr10: 12934122-12934207 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-9-3

• gga-mir-9b-1: chr10: 12934137-12934193 [+]
• gga-mir-9-3: chr10: 12934122-12934207 [-]

Database links

• miRBase Tracker:MI0029331

Mature sequence gga-miR-9-5p

• Accession: MIMAT0001195
• Previous IDs: gga-miR-9
• Sequence: 14 - ucuuugguuaucuagcuguauga - 36
• Deep sequencing: 23818269 reads, 5 experiments
• Evidence: by similarity; MI0000466

References

1. PMID:24798503 "Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles" Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ Evol Dev. 16:189-196(2014).