Stem-loop bra-MIR408

Accession

MI0029311

Description

Brassica rapa bra-MIR408 precursor miRNA

Gene family

MIPF0000102; MIR408

Literature search

6 open access papers mention bra-MIR408
(13 sentences)

Sequence

ugaaaggagagaaaaaaaaagagaagggauagaaagaggaGGGAGCCAGGGAAGAGGCAGUgcaugggaagagaccaaacauagucauuugauguuuugguaaaaacucaauccaugcucUGCUUGUUCCCUGUCUCUCUCugauuaccacuuuugucuucuucauuu
.....(((((.........(((.(((((.....((..((((((((.(((((((.((((((.(((((((..(((((((((....(((....)))..)))))).....)))..))))))).)))))).))))))).))))))))..))....))))).))))))))....

Structure

ugaaa     gaaaaaaaa   g     auaga  ga        C       G      U       aa   -----      caua   a 
     ggaga         aga aaggg     aa  ggaGGGAG CAGGGAA AGGCAG gcauggg  gag     accaaa    guc u
     |||||         ||| |||||     ||  |||||||| ||||||| |||||| |||||||  |||     ||||||    |||  
     cuucu         ucu uuuuc     uu  uCUCUCUC GUCCCUU UUCGUc cguaccu  cuc     ugguuu    uag u
-uuua     ---------   g     -acca  ag        U       G      u       aa   aaaaa      --ug   u 

Annotation confidence Not enough data

Genome context

chrA5: 364768-364935 [+]

Mature bra-miR408-5p

• Accession: MIMAT0035683
• Description: Brassica rapa bra-miR408-5p mature miRNA
• Sequence: 41 - GGGAGCCAGGGAAGAGGCAGU - 61
• Evidence: experimental ; Illumina [1]

Mature bra-miR408-3p

• Accession: MIMAT0035684
• Description: Brassica rapa bra-miR408-3p mature miRNA
• Sequence: 121 - UGCUUGUUCCCUGUCUCUCUC - 141
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146