miRBase entry: dvi-mir-973

Stem-loop dvi-mir-973


Accession
MI0029263
Description
Drosophila virilis dvi-mir-973 precursor miRNA
Gene family
MIPF0001970; mir-973


Sequence

ucggacauucacuuuuCGUGUUCGAUGUUUGAACUUGGAUUUuuuuuauauacacaaAUCUGUUCAUUCCUCGACACUagaaguuugcgucaaua
...(((....((((((.((((.(((.(..(((((..((((((.............)))))))))))..).))))))).))))))....)))....

Structure
-ucg   auuc      C    U   U UU     UU      uuuuu 
    gac    acuuuu GUGU CGA G  UGAAC  GGAUUU     a
    |||    |||||| |||| ||| |  |||||  ||||||     u
    cug    ugaaga CACA GCU C  ACUUG  UCUAaa     a
auaa   cguu      U    -   C UU     --      cacau 


Annotation confidence Not enough data
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Genome context
scaffold_13042: 918343-918437 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from dvi-mir-973
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-973-3p

Accession MIMAT0035593
Description Drosophila virilis dvi-miR-973-3p mature miRNA
Sequence 58 - AUCUGUUCAUUCCUCGACACU - 78
Evidence experimental
Illumina [1-2]

Mature dvi-miR-973-5p

Accession MIMAT0037534
Description Drosophila virilis dvi-miR-973-5p mature miRNA
Sequence 17 - CGUGUUCGAUGUUUGAACUUGGAUUU - 42
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372

  2. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250