miRBase entry: dvi-mir-963

Stem-loop dvi-mir-963


Accession
MI0029256
Description
Drosophila virilis dvi-mir-963 precursor miRNA


Sequence

gaugggcauaaacaacaaucuaaucugaAACAAGGUACAUAUCAGAGUGUUUCuuaaauuugauuauugaaaccucuguauauaccuuucauuggauuaaacugauaagcacauguuucaaa
.(((.((.........(((((((..((((...(((((.(((.(((((.(((((...............))))))))))))).))))))))))))))))..........)).)))........

Structure
-------g   g  -auaaacaac       uc    ACA     C   U     U     uuaaau 
        aug gc          aaucuaa  ugaA   AGGUA AUA CAGAG GUUUC      u
        ||| ||          |||||||  ||||   ||||| ||| ||||| |||||      u
        uac cg          uuagguu  acuu   uccau uau gucuc caaag      g
aaacuuug   a  aauagucaaa       --    ---     a   -     -     uuauua 


Annotation confidence Not enough data
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Genome context
scaffold_12963: 3616341-3616462 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dvi-mir-963
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-963-5p

Accession MIMAT0035582
Description Drosophila virilis dvi-miR-963-5p mature miRNA
Sequence 29 - AACAAGGUACAUAUCAGAGUGUUUC - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372