miRBase entry: dvi-mir-962

Stem-loop dvi-mir-962


Accession
MI0029255
Description
Drosophila virilis dvi-mir-962 precursor miRNA


Sequence

cacacacacauaagaaagggcgccucaaauuAUAAGGUAGAGAAAUUGUUGUCUacuuuacauauggugagacaucaauucacuagcuuucaauuuguacgcccaaaugcaacggaaccauu
.................(((((...((((((..(((.(((.(((.(((.((((((((........))).))))).)))))).))).)))..))))))..)))))..................

Structure
-cacacacacauaagaaa     ccu      AU   G   A   A   U     -   uua 
                  gggcg   caaauu  AAG UAG GAA UUG UGUCU acu   c
                  |||||   ||||||  ||| ||| ||| ||| ||||| |||    
                  cccgc   guuuaa  uuc auc cuu aac acaga ugg   a
uuaccaaggcaacguaaa     -au      cu   g   a   -   u     g   uau 


Annotation confidence Not enough data
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Genome context
scaffold_12963: 3615419-3615540 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dvi-mir-962
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-962-5p

Accession MIMAT0035581
Description Drosophila virilis dvi-miR-962-5p mature miRNA
Sequence 32 - AUAAGGUAGAGAAAUUGUUGUCU - 54
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372