Stem-loop sequence bdi-MIR5200a

Accession

MI0029233 (change log)

Description

Brachypodium distachyon miR5200a stem-loop

Gene family

MIPF0001904; MIR5200

Literature search

3 open access papers mention bdi-MIR5200a
(19 sentences)

Stem-loop

   aaa  -  ua            a          ag     ucuuu   uuu 
5'    gc ac  gagccuuaggga uaucuacacu  uaagu     ucc   c
      || ||  |||||||||||| ||||||||||  |||||     |||    
3'    ug ug  uucggaaucccu auagauguga  auucg     agg   u
   uua  c  gc            c          cg     --uac   ucu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 1: 47454224-47454324 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0029233

Mature sequence bdi-miR5200a-5p

• Accession: MIMAT0035544
• Sequence: 12 - gccuuagggaauaucuacacu - 32
• Evidence: not experimental

Mature sequence bdi-miR5200a-3p

• Accession: MIMAT0035545
• Sequence: 71 - uguagauacucccuaaggcuu - 91
• Evidence: not experimental

References

1. PMID:24285787 "Regulation of FLOWERING LOCUS T by a microRNA in Brachypodium distachyon" Wu L, Liu D, Wu J, Zhang R, Qin Z, Liu D, Li A, Fu D, Zhai W, Mao L Plant Cell. 25:4363-4377(2013).