Stem-loop bdi-MIR5169b

Accession

MI0029178

Description

Brachypodium distachyon bdi-MIR5169b precursor miRNA

Gene family

MIPF0001872; MIR5169

Sequence

auugUUUGACCAAGUUUGUAGAACAauaucucaacaucuacaacacuaaauuaguuuuauuagugauauacuuauuugauauuguagauaugagucaaaguuuugcuacagacuaagauuacucccuucguucuaaaauauaaggguucuagcuuugucccgaaucaaacuagcuuauuauuguucgaccaaguuuguagaacaau
(((((((...((((((((..((((((((.......((((((((...(((((.(((..((((...)))).))).)))))...))))))))((((((...(((((.......(((.(((......(((((.((........)))))))......))).))).......))))).))))))))))))))...))))))))..)))))))

Structure

       GAC        -UA        ucucaacaucuacaacacuaaauuaguuuuauuagugauauacuuauuugauauuguagau      caa     ugcuaca   u   auuacu     c  ucu 
auugUUU   CAAGUUUG   GAACAaua                                                             augagu   aguuu       gac aag      cccuu gu   a
|||||||   ||||||||   ||||||||                                                             ||||||   |||||       ||| |||      ||||| ||    
uaacaag   guuugaac   cuuguuau                                                             uauucg   ucaaa       cug uuc      gggaa ua   a
       -au        cag        -------------------------------------------------------------      --a     cuaagcc   u   gaucuu     -  uaa 

Annotation confidence Not enough data

Genome context

5: 20527327-20527532 [-]

Mature bdi-miR5169b

• Accession: MIMAT0035536
• Description: Brachypodium distachyon bdi-miR5169b mature miRNA
• Sequence: 5 - UUUGACCAAGUUUGUAGAACA - 25
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145