Stem-loop bdi-MIR2118b

Accession

MI0029174

Description

Brachypodium distachyon bdi-MIR2118b precursor miRNA

Gene family

MIPF0000745; MIR2118

Literature search

3 open access papers mention bdi-MIR2118b
(31 sentences)

Sequence

gaggugcaaauauucaguuugguguuUUCCUGAUGCCUCCCAUUCCUAugguucuugagcacuccuuccucuuccuuuuggccugcgaaauggcuuaacgaagaaauuguagguauuugugcauacuuuuagacaaugugaggcaggucgggaagaggaagagaagagggccuuagagcagugggagugggaacauggaggaaagccugacuugcuuuguuuucaccuc
((((((.(((((..(((.((((.((((((((.(((..((((((((((((.(((((...((.(((((((((((((((...(((((((...(((.......((((....((((.(....).))))..)))).......)))...)))))))))))))))))))....))).))...))))).)))))))))))).)))..)))))))))))).)))...))))).))))))

Structure

      c     -uu   u    u        -G   CC            g     uga  a   ----            uuu       gaa   gcuuaac    aaau    g u 
gaggug aaaua   cag uugg guuUUCCU  AUG  UCCCAUUCCUAu guucu   gc cuc    cuuccucuuccu   ggccugc   aug       gaag    ugua g a
|||||| |||||   ||| |||| ||||||||  |||  |||||||||||| |||||   || |||    ||||||||||||   |||||||   |||       ||||    |||| |  
cuccac uuugu   guu aguc cgaaagga  uac  agggugagggug cgaga   cg gag    gaaggagaaggg   cuggacg   ugu       uuuc    acgu u u
      u     uuc   c    -        gg   -a            a     uuc  g   aaga            ---       gag   aacagau    --au    g u 

Annotation confidence Not enough data

Genome context

Unknown

Mature bdi-miR2118b

• Accession: MIMAT0035532
• Description: Brachypodium distachyon bdi-miR2118b mature miRNA
• Sequence: 27 - UUCCUGAUGCCUCCCAUUCCUA - 48
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145