miRBase entry: bdi-MIR444b

Stem-loop bdi-MIR444b


Accession
MI0029165
Description
Brachypodium distachyon bdi-MIR444b precursor miRNA
Gene family
MIPF0000402; MIR444

Literature search
1 open access papers mention bdi-MIR444b
(3 sentences)

Sequence

gauucgcaugcggcggcaccaagcaugaggcgacaacugcauuacuugcugggaagacgcaaguaugacagcgaaacaugcauuacuugcgggaaaggcgcaaaacgaauagaagaucaucauacuuguggcuuucuugcaaguugUGCAGUUGCUGCCUCAAGCUUgcugccucccuuugccagagc
.....(((...((.((((.(((((.(((((((.(((((((((.((((((.((((((.(((((((((((..((.......)).....(((((.......)))))................))))))))))).)))))).)))))).))))))))).))))))).))))).)))).))...)))......

Structure
-gauuc   ugc  c    c     a       a         u      u      a           cagcgaaacaugcauuac     gg 
      gca   gg ggca caagc ugaggcg caacugcau acuugc gggaag cgcaaguauga                  uugcg  a
      |||   || |||| ||||| ||||||| ||||||||| |||||| |||||| |||||||||||                  |||||  a
      cgu   cc ccgu gUUCG ACUCCGU GUUGACGUg ugaacg ucuuuc guguucauacu                  aacgc  a
cgagac   uuc  u    c     A       C         u      u      g           --acuagaagauaagcaa     gg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bdi-miR444b

Accession MIMAT0035523
Description Brachypodium distachyon bdi-miR444b mature miRNA
Sequence 147 - UGCAGUUGCUGCCUCAAGCUU - 167
Evidence not_experimental

References

  1. PubMed ID: 24367943
    Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
    Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
    Genome Biol (2013) 14:R145