Stem-loop sequence bdi-MIR399d

AccessionMI0029164 (change log)
DescriptionBrachypodium distachyon miR399d stem-loop
Gene family MIPF0000015; MIR399
Literature search

3 open access papers mention bdi-MIR399d
(8 sentences)

Stem-loop 
   -ug  -u   -aa    c     a      cuc    g        g    --   g  u    gugg c    u 
5'    cg  gug   ggug auugc gggcaa   cucc uuggcaga ggac  gac ga ggau    c gggg u
      ||  |||   |||| ||||| ||||||   |||| |||||||| ||||  ||| || ||||    | ||||  
3'    gc  cac   ccac uagcg cccguu   gagg aaccgucu ccug  cug uu ccua    g uccc c
   uca  uu   cca    u     g      -ua    a        g    uc   g  -    ---a u    u
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Bd21; GCA_000005505.1) Overlapping transcripts
3: 7132920-7133061 [-]
intergenic
Clustered miRNAs
< 10kb from bdi-MIR399d
bdi-MIR399b3: 7135266-7135425 [+]
bdi-MIR399d3: 7132920-7133061 [-]
Database links

Mature sequence bdi-miR399d

Accession MIMAT0035522
Sequence

100 -  

ugccaaaggagauuugcccgg

 - 120

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Evidence not experimental

References

1
PMID:24367943 "Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon" Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ Genome Biol. 14:R145(2013).