Stem-loop bdi-MIR399d

Accession

MI0029164

Description

Brachypodium distachyon bdi-MIR399d precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

3 open access papers mention bdi-MIR399d
(8 sentences)

Sequence

ugcgugugaaggugcauugcagggcaacuccuccguuggcagagggacgacggauggauguggccgggguucucccuugaauccuugguccuguccgucUGCCAAAGGAGAUUUGCCCGGcgauucaccacccacuucgacu
...(((.(..((((.(((((.((((((.((.(((.((((((((.(((((((.((.((((......((((....))))...)))))).)))..)))).)))))))).))))).)))))).))))).))))..)))).......

Structure

----ugc   u aa    c     a      c  c   g        g    --   g  u    guggcc    u 
       gug g  ggug auugc gggcaa uc ucc uuggcaga ggac  gac ga ggau      gggg u
       ||| |  |||| ||||| |||||| || ||| |||||||| ||||  ||| || ||||      ||||  
       cac c  ccac uagcG CCCGUU AG AGG AACCGUcu ccug  cug uu ccua      uccc c
ucagcuu   - ca    u     G      U  -   A        g    uc   g  -    ---agu    u 

Annotation confidence Not enough data

Genome context

3: 7132920-7133061 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR399d

Mature bdi-miR399d

• Accession: MIMAT0035522
• Description: Brachypodium distachyon bdi-miR399d mature miRNA
• Sequence: 100 - UGCCAAAGGAGAUUUGCCCGG - 120
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145