miRBase entry: bdi-MIR9497

Stem-loop bdi-MIR9497


Accession
MI0029148
Description
Brachypodium distachyon bdi-MIR9497 precursor miRNA


Sequence

ucccuccuuUUUCUGAAUACAUGGUGUAUCauguuucuuaagacauggcuuggaccaagaauuacuuuauuuuauaugugauguaauaugauacgaaaccacaauuuucaguaaguaguuuugaagauggaucuggugaugcaaauuucaugucauaaacccacguauugacgaaguaauuuuuggucaaagccuugucuugacuaaaucuuauacacccuguauugagaaaaauagggagu
(((((..(((((((.((((((.(((((((...((((.((((((((.(((((.((((((((((((((((.((..(((((((..((..(((((((.((((.....((((((((.........))))))))(.(((....))).)...)))).))))))).)).))))))).)).)))))))))))))))).))))).))))))))..))))...))))))).)))))).))))))).)))))..

Structure
--     cc       G      U       Cau    -c        u     g                a  uu       au  aa       c    ------------ccaca        uaa 
  ucccu  uuUUUCU AAUACA GGUGUAU   guuu  uuaagaca ggcuu gaccaagaauuacuuu uu  auaugug  gu  uaugaua gaaa                 auuuucag   g
  |||||  ||||||| |||||| |||||||   ||||  |||||||| ||||| |||||||||||||||| ||  |||||||  ||  ||||||| ||||                 ||||||||   u
  aggga  aaaaaga uuaugu ccacaua   uaaa  aguucugu ccgaa cugguuuuuaaugaag ag  uaugcac  ca  auacugu cuuu                 uagaaguu   a
ug     -u       g      c       uuc    uc        u     a                c  -u       -c  -a       a    aaacguaguggucuagg        uug 


Annotation confidence Not enough data
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Genome context
2: 49315484-49315725 [-]

Database links

Mature bdi-miR9497

Accession MIMAT0035506
Description Brachypodium distachyon bdi-miR9497 mature miRNA
Sequence 10 - UUUCUGAAUACAUGGUGUAUC - 30
Evidence not_experimental

References

  1. PubMed ID: 24367943
    Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
    Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
    Genome Biol (2013) 14:R145