miRBase entry: bdi-MIR9486b

Stem-loop bdi-MIR9486b


Accession
MI0029139
Description
Brachypodium distachyon bdi-MIR9486b precursor miRNA
Gene family
MIPF0002054; MIR9486


Sequence

gaugagauaaaaaguggaaccucuggccacuuaaauguaucuuaggaaauaaaaaccuaaagaauccuaccucaggcggguuuuucguaaaauacuuuUAAGUGAUUAGAGGUUCCAGUuuucaucua
....((((.((((.((((((((((((.((((((((.((((.(((.((((....(((((...((........))....))))))))).))).)))).)))))))).)))))))))))).)))).)))).

Structure
gaug    a    g            c        u    c   g    uaaa     -aaa  auc 
    agau aaaa uggaaccucugg cacuuaaa guau uua gaaa    aaccu    ga   c
    |||| |||| |||||||||||| |||||||| |||| ||| ||||    |||||    ||    
    ucua uuuU ACCUUGGAGAUU GUGAAUuu caua aau cuuu    uuggg    cu   u
---a    c    G            A        u    a   g    ----     cgga  cca 


Annotation confidence Not enough data
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Genome context
3: 10710427-10710554 [-]

Database links

Mature bdi-miR9486b

Accession MIMAT0035497
Description Brachypodium distachyon bdi-miR9486b mature miRNA
Sequence 99 - UAAGUGAUUAGAGGUUCCAGU - 119
Evidence not_experimental

References

  1. PubMed ID: 24367943
    Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
    Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
    Genome Biol (2013) 14:R145