miRBase entry: bdi-MIR9483b

Stem-loop bdi-MIR9483b


Accession
MI0029132
Description
Brachypodium distachyon bdi-MIR9483b precursor miRNA
Gene family
MIPF0001996; MIR9483

Literature search
1 open access papers mention bdi-MIR9483b
(2 sentences)

Sequence

guagaagUUGAACUGUUUCCUCUGAAGUUCCugcagauuucguguguggaguuggaguguucaucuaaaauguauauauagcuaggaacccuaauaagaaaagcauauauuuggucccuagagaaggucccgaaaucgugucagcgugaaaagucagaacuagguuuuagcaaaauccacacuaaauccauauguugcauuugcauacaugggacacaagaaucucguaggugcuucacaggaaacaguucaauguuugcug
(((((.(((((((((((((((.((((((.(((((((((((...(((((((.(((((.......)))))............(((((((..((((.........((((...(((((..(((.....)))..)))))...)))).....(((....)))....)))))))))))....)))))))....(((.((((((((....))).)))))))).....)))))).))))).)))))).))))))))))))))).)))))..

Structure
--     a               C      U     -      ----------------------------------cgu       guuggaguguucaucuaaaauguauauaua       ac    ----------auaagaaaa    aua     uc   a 
  guaga gUUGAACUGUUUCCU UGAAGU CCugc agauuu                                     gugugga                              gcuagga  ccua                   gcau   uuugg  ccu g
  ||||| ||||||||||||||| |||||| ||||| ||||||                                     |||||||                              |||||||  ||||                   ||||   |||||  ||| a
  cguuu uaacuugacaaagga acuucg ggaug ucuaag                                     cacaccu                              cgauuuu  ggau                   ugug   aagcc  gga g
gu     g               c      u     c      aacacaggguacauacguuuacguuguauaccuaaau       --------------------------aaaa       --    caagacugaaaagugcgac    cua     cu   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bdi-miR9483b

Accession MIMAT0035490
Description Brachypodium distachyon bdi-miR9483b mature miRNA
Sequence 8 - UUGAACUGUUUCCUCUGAAGUUCC - 31
Evidence not_experimental

References

  1. PubMed ID: 24367943
    Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
    Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
    Genome Biol (2013) 14:R145