Stem-loop sequence sly-MIR9472

AccessionMI0029108 (change log)
DescriptionSolanum lycopersicum miR9472 stem-loop
Literature search

2 open access papers mention sly-MIR9472
(6 sentences)

Stem-loop 
         uucaauu    -  ac    -c   cca        c      u             c          auu    -         a           u   a    caga  c  g 
5' augggu       auag cu  agau  uuc   uagaucua ucgauu auuuuucaguaga guugugaaua   gaua aauacaggu uacagaggucu aau uagu    ac ua a
   ||||||       |||| ||  ||||  |||   |||||||| |||||| ||||||||||||| ||||||||||   |||| ||||||||| ||||||||||| ||| ||||    || ||  
3' ugcccg       uauu ga  ucua  aag   aucuagau aguuag uaaaaagucgucu uaacacuuau   uugu uuauguuca auguuuccaga uua auca    ug au a
         ---uaau    a  --    au   --c        c      -             c          -cg    c         c           c   g    -aug  u  a
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (SL2.50; GCA_000188115.2) Overlapping transcripts
chr8: 58966598-58966830 [+]
intergenic
Database links

Mature sequence sly-miR9472-5p

Accession MIMAT0035449
Sequence

52 -  

uuucaguagacguugugaaua

 - 72

Get sequence
Evidence experimental; Illumina [1]

Mature sequence sly-miR9472-3p

Accession MIMAT0035450
Sequence

170 -  

uucacaaucucugcugaaaaa

 - 190

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:24376253 "Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant" Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T J Exp Bot. 65:725-739(2014).