miRBase entry: sly-MIR9471a

Stem-loop sly-MIR9471a


Accession
MI0029107
Description
Solanum lycopersicum sly-MIR9471a precursor miRNA
Gene family
MIPF0002045; MIR9471

Literature search
3 open access papers mention sly-MIR9471a
(4 sentences)

Sequence

gaucauugacggauuugggguucugagauucaguugauuucuCAGGUGCUCACUCAGCUAAUAguuauuauuuaagaaacucaauaauauuggcagcaaggagaauggugacuuucaggaugauaacuaUUGGCUGAGUGAGCAUCACGGaaaucgacgugauucugagaggaaaaugauu
(((((((.............((((.(((.(((((((((((((..(((((((((((((((((((((((((((((..((((.(((......(((....))).........))).)))).)))))))))))))))))))))))))))))..)))))))))).))).))).))))...)))))))

Structure
       gacggauuugggg    g   u   -          CA                             aa    c   ---auaaua   g 
gaucauu             uucu aga uca guugauuucu  GGUGCUCACUCAGCUAAUAguuauuauuu  gaaa uca         uug c
|||||||             |||| ||| ||| ||||||||||  |||||||||||||||||||||||||||||  |||| |||         |||  
uuaguaa             gaga ucu agu cagcuaaaGG  CUACGAGUGAGUCGGUUaucaauaguagg  cuuu agu         aac a
       ----------aag    g   u   g          CA                             -a    c   gguaagagg   g 


Annotation confidence Not enough data
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Genome context
chr12: 1977726-1977906 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sly-MIR9471a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sly-miR9471a-5p

Accession MIMAT0035447
Description Solanum lycopersicum sly-miR9471a-5p mature miRNA
Sequence 43 - CAGGUGCUCACUCAGCUAAUA - 63
Evidence experimental
Illumina [1]

Mature sly-miR9471a-3p

Accession MIMAT0035448
Description Solanum lycopersicum sly-miR9471a-3p mature miRNA
Sequence 130 - UUGGCUGAGUGAGCAUCACGG - 150
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24376253
    Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
    Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
    J Exp Bot (2014) 65:725-739