Stem-loop sequence sly-MIR9471a

AccessionMI0029107 (change log)
DescriptionSolanum lycopersicum miR9471a stem-loop
Gene family MIPF0002045; MIR9471
Literature search

3 open access papers mention sly-MIR9471a
(4 sentences)

Stem-loop 
   gaucauugacggauuugggg    g   u   -          ca                             aa    c   auaa    gg ag 
5'                     uucu aga uca guugauuucu  ggugcucacucagcuaauaguuauuauuu  gaaa uca    uauu  c  c
                       |||| ||| ||| ||||||||||  |||||||||||||||||||||||||||||  |||| |||    ||||  |   
3'                     gaga ucu agu cagcuaaagg  cuacgagugagucgguuaucaauaguagg  cuuu agu    guaa  g  a
   ----------uuaguaaaag    g   u   g          ca                             -a    c   ---g    ga ga
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (SL2.50; GCA_000188115.2) Overlapping transcripts
chr12: 1977726-1977906 [-]
intergenic
Clustered miRNAs
< 10kb from sly-MIR9471a
sly-MIR9471bchr12: 1979337-1979576 [-]
sly-MIR9471achr12: 1977726-1977906 [-]
Database links

Mature sequence sly-miR9471a-5p

Accession MIMAT0035447
Sequence

43 -  

caggugcucacucagcuaaua

 - 63

Get sequence
Evidence experimental; Illumina [1]

Mature sequence sly-miR9471a-3p

Accession MIMAT0035448
Sequence

130 -  

uuggcugagugagcaucacgg

 - 150

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:24376253 "Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant" Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T J Exp Bot. 65:725-739(2014).