Stem-loop sequence sly-MIR5302b

AccessionMI0029106 (change log)
DescriptionSolanum lycopersicum miR5302b stem-loop
Gene family MIPF0001975; MIR5302
Literature search

3 open access papers mention sly-MIR5302b
(4 sentences)

Stem-loop 
        --     a      uga                    cuaaac        u    g                        aaugucucuugaucaacuuuu 
5' aagca  uuuuc gcaaaa   aaugcuauaguuggaaaguu      auuucgga gaua uuccaaaguaacaaaucucguuug                     a
   |||||  ||||| ||||||   ||||||||||||||||||||      |||||||| |||| ||||||||||||||||||||||||                      
3' uuugu  aaaag cguuuu   uuacgauaucaacuuuucaa      uaaagcuu cuau aagguuucauuguuuggagcaaac                     u
        uu     g      uua                    aaaguc        u    -                        cuauauauauauauauauaua
Get sequence
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (SL2.50; GCA_000188115.2) Overlapping transcripts
chr7: 4228975-4229187 [+]
intergenic
Clustered miRNAs
< 10kb from sly-MIR5302b
sly-MIR169achr7: 4225343-4225491 [+]
sly-MIR5302bchr7: 4228975-4229187 [+]
Database links

Mature sequence sly-miR5302b-5p

Accession MIMAT0035445
Sequence

18 -  

ugaaaugcuauaguuggaaagu

 - 39

Get sequence
Evidence experimental; Illumina [1]

Mature sequence sly-miR5302b-3p

Accession MIMAT0035446
Sequence

175 -  

uuuucaacuauagcauuauuuu

 - 196

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:24376253 "Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant" Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T J Exp Bot. 65:725-739(2014).