miRBase entry: sly-MIR394

Stem-loop sly-MIR394


Accession
MI0029102
Description
Solanum lycopersicum sly-MIR394 precursor miRNA
Gene family
MIPF0000100; MIR394

Literature search
7 open access papers mention sly-MIR394
(35 sentences)

Sequence

caaucuugauuuucaugaagauuucucaaaggguuccuuacauaguucuUUGGCAUUCUGUCCACCUCCuuuaccuucauaaucuucuauuuuuuuagaaaaauaauuuuuguuauuauuuuuuuuaaaaaauggAGGUGGGCAUACUGUCAACAgauuuguguuaguuucucuuugugaaaucuucuugauguuaauug
.....(((((..(((.(((((((((.(((((((...((.((((((.(((((((((...(((((((((((...................(((((((.(((((((((((.......))))))))))).))))))))))))))))))...)))))).))).)))))).))...))))))).))))))))).))).)))))...

Structure
caauc     uu   u         u       uuc  u      u   -      UUC           uuuaccuucauaaucuucu       u           uu 
     uugau  uca gaagauuuc caaaggg   cu acauag ucu UUGGCA   UGUCCACCUCC                   auuuuuu agaaaaauaau  u
     |||||  ||| ||||||||| |||||||   || |||||| ||| ||||||   |||||||||||                   ||||||| |||||||||||  u
     aauug  agu cuucuaaag guuucuc   ga uguguu agA AACUGU   ACGGGUGGAgg                   uaaaaaa uuuuuuuauua  g
--guu     -u   u         u       uuu  u      u   C      CAU           -------------------       u           uu 


Annotation confidence Not enough data
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Genome context
chr4: 65891077-65891276 [+]

Database links

Mature sly-miR394-5p

Accession MIMAT0035437
Description Solanum lycopersicum sly-miR394-5p mature miRNA
Sequence 50 - UUGGCAUUCUGUCCACCUCC - 69
Evidence experimental
Illumina [1]

Mature sly-miR394-3p

Accession MIMAT0035438
Description Solanum lycopersicum sly-miR394-3p mature miRNA
Sequence 136 - AGGUGGGCAUACUGUCAACA - 155
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24376253
    Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
    Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
    J Exp Bot (2014) 65:725-739