Stem-loop sly-MIR403

Accession

MI0029100

Description

Solanum lycopersicum sly-MIR403 precursor miRNA

Gene family

MIPF0000290; MIR403

Literature search

7 open access papers mention sly-MIR403
(24 sentences)

Sequence

agaaauugaaaaucaggaagaggcauauuucaCGUUUGUGCGUGAAUCUAACAacucuuuucaucugaaaaacuguuauuguuugCUAGAUUCACGCACAAGCUCGuaauauggcuuuuccaaucucugcgcuuugauuucu
((((((((((...(((((((((.((((((....((((((((((((((((((((((..(((((....)))))...))...)))....)))))))))))))))))....)))))).)))))))......))...))))))))))

Structure

          aau  ------       g      ucaC                 ----   ---  -uc     a 
agaaauugaa   ca      ggaagag cauauu    GUUUGUGCGUGAAUCUA    ACA   ac   uuuuc u
||||||||||   ||      ||||||| ||||||    |||||||||||||||||    |||   ||   |||||  
ucuuuaguuu   gu      ccuuuuc guauaa    CGAACACGCACUUAGAU    ugu   ug   aaaag c
          cgc  cucuaa       g      uGCU                 Cguu   uau  uca     u 

Annotation confidence Not enough data

Genome context

chr1: 78368928-78369069 [+]

Mature sly-miR403-5p

• Accession: MIMAT0035433
• Description: Solanum lycopersicum sly-miR403-5p mature miRNA
• Sequence: 33 - CGUUUGUGCGUGAAUCUAACA - 53
• Evidence: experimental ; Illumina [1]

Mature sly-miR403-3p

• Accession: MIMAT0035434
• Description: Solanum lycopersicum sly-miR403-3p mature miRNA
• Sequence: 86 - CUAGAUUCACGCACAAGCUCG - 106
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739