Stem-loop sequence sly-MIR319c

Accession

MI0029099 (change log)

Description

Solanum lycopersicum miR319c stem-loop

Gene family

MIPF0000010; MIR159

Literature search

22 open access papers mention sly-MIR319c
(147 sentences)

Stem-loop

   gg     -ucc   a             c   cu  c    -    aau     --u      g  g   ac       uc   c   uc     aaa   u 
5'   aaugg    aag gagcuuccuucag cca  ca ggag gaga   ggggu   gaauua cu ccg  ucauuca  caa cac  aguag   gga a
     |||||    ||| ||||||||||||| |||  || |||| ||||   |||||   |||||| || |||  |||||||  ||| |||  |||||   ||| g
3'   uuacc    uuc cucgagggaaguc ggu  gu ccuu cucu   cccua   uuugau ga ggc  aguaagu  guu gug  ucauc   uuu g
   --     ccuu   -             a   uc  u    u    ---     ucu      a  g   gu       ga   a   --     gug   u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr3: 56451852-56452046 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0029099

Mature sequence sly-miR319c-5p

• Accession: MIMAT0035431
• Sequence: 14 - agagcuuccuucagcccacuc - 34
• Evidence: experimental; Illumina [1]

Mature sequence sly-miR319c-3p

• Accession: MIMAT0035432
• Sequence: 166 - uuggacugaagggagcuccuu - 186
• Evidence: experimental; Illumina [1]

References

1. PMID:24376253 "Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant" Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T J Exp Bot. 65:725-739(2014).