miRBase entry: efu-mir-154

Stem-loop efu-mir-154


Accession
MI0028724
Description
Eptesicus fuscus efu-mir-154 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

guccuugaggAGAGGUCUUCCAUGAUGCAUUCACUguacucguagcugaaucauacaugguagaccuguuuucaaguauca
...((((((((.((((((.((((((((.((((((((......))).)))))))).))))).)))))).)))))))).....

Structure
--guc        G      U     -   C     -   ua 
     cuugaggA AGGUCU CCAUG AUG AUUCA CUg  c
     |||||||| |||||| ||||| ||| ||||| |||   
     gaacuuuu uccaga gguac uac uaagu gau  u
acuau        g      u     a   -     c   gc 


Annotation confidence Not enough data
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Genome context
JH977717.1: 836837-836917 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from efu-mir-154
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-154

Accession MIMAT0035039
Description Eptesicus fuscus efu-miR-154 mature miRNA
Sequence 11 - AGAGGUCUUCCAUGAUGCAUUCACU - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545