miRBase entry: efu-mir-485

Stem-loop efu-mir-485


Accession
MI0028723
Description
Eptesicus fuscus efu-mir-485 precursor miRNA
Gene family
MIPF0000201; mir-485


Sequence

guacuuggagagaggcuggccgugaugaauucgauucaucaaagcgaGUCAUACACGGCUCUCCUCUCUuuuaguauca
(((((.(((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))).)))))..

Structure
--     u         cu       -    a    auuc 
  guacu ggagagagg  ggccgug auga uucg    a
  ||||| |||||||||  ||||||| |||| ||||    u
  uauga uuUCUCUCC  UCGGCAC UACU Gagc    c
ac     u         UC       A    -    gaaa 


Annotation confidence Not enough data
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Genome context
JH977717.1: 841215-841293 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from efu-mir-485
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-485

Accession MIMAT0035038
Description Eptesicus fuscus efu-miR-485 mature miRNA
Sequence 48 - GUCAUACACGGCUCUCCUCUCU - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545