miRBase entry: efu-let-7f

Stem-loop efu-let-7f


Accession
MI0028702
Description
Eptesicus fuscus efu-let-7f precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

ucuaucagagUGAGGUAGUAGAUUGUAUAGUUGUGggguaguuauuuuacccuguucaggagauaacuauacaaucuauugccuucccugcggaguag
(((..(((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).)))).)))....

Structure
----   au   a U                       ---------       u 
    ucu  cag g GAGGUAGUAGAUUGUAUAGUUGU         Gggguag u
    |||  ||| | |||||||||||||||||||||||         ||||||| a
    agg  guc c uuccguuaucuaacauaucaaua         ucccauu u
gaug   -c   - c                       gaggacuug       u 


Annotation confidence Not enough data
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Genome context
JH977714.1: 1024362-1024459 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from efu-let-7f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-let-7f

Accession MIMAT0035017
Description Eptesicus fuscus efu-let-7f mature miRNA
Sequence 11 - UGAGGUAGUAGAUUGUAUAGUUGUG - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545