miRBase entry: efu-mir-200a

Stem-loop efu-mir-200a


Accession
MI0028698
Description
Eptesicus fuscus efu-mir-200a precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

gccccugugggcaucuuaccggacagugcuggauuaucggcuugacucUAACACUGUCUGGUAACGAUGUUCaaaggugacc
...(((.(((((((((((((((((((((.(((((((......))).)))).))))))))))))).)))))))).))).....

Structure
--gcc   g        -             c    -   uc 
     ccu ugggcauc uuaccggacagug ugga uua  g
     ||| |||||||| ||||||||||||| |||| |||   
     gga aCUUGUAG AAUGGUCUGUCAC AUcu agu  g
ccagu   a        C             A    c   uc 


Annotation confidence Not enough data
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Genome context
JH977681.1: 208600-208681 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from efu-mir-200a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-200a

Accession MIMAT0035013
Description Eptesicus fuscus efu-miR-200a mature miRNA
Sequence 49 - UAACACUGUCUGGUAACGAUGUUC - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545