miRBase entry: efu-mir-17

Stem-loop efu-mir-17


Accession
MI0028684
Description
Eptesicus fuscus efu-mir-17 precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

ucagaguaaugucaaagugcuuacagugcagguagugauaugugcaucuACUGCAGUGAAGGCACUUGUAGCAUuauggugaca
(((..(((((((..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))...)))))))..)))..

Structure
--   ga       -ca        a  g     g   -  au 
  uca  guaaugu   aagugcuu ca ugcag uag ug  a
  |||  |||||||   |||||||| || ||||| ||| ||  u
  agu  uauUACG   UUCACGGA GU ACGUC Auc ac  g
ac   gg       AUG        A  G     -   u  gu 


Annotation confidence Not enough data
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Genome context
JH977750.1: 95455-95538 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from efu-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-17

Accession MIMAT0034999
Description Eptesicus fuscus efu-miR-17 mature miRNA
Sequence 50 - ACUGCAGUGAAGGCACUUGUAGCAU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545