miRBase entry: efu-mir-9283

Stem-loop efu-mir-9283


Accession
MI0028620
Description
Eptesicus fuscus efu-mir-9283 precursor miRNA


Sequence

agacacggccUGUGGCCUUGAAGCUGAGCGGAGGGgagcccuccggggcccgcagccucgcgcucggcucugggcuggcugggccggcuuugc
.....((((((((.((((.((.((((((((((((((.((((....))))))....)))).)))))))))).))))..)).)))))).......

Structure
--agaca      -  -G    U  A        -    ----  a    u 
       cggccU GU  GCCU GA GCUGAGCG GAGG    Gg gccc c
       |||||| ||  |||| || |||||||| ||||    || ||||  
       gccggg cg  cggg cu cggcucgc cucc    cc cggg c
cguuucg      u  gu    u  -        g    gacg  -    g 


Annotation confidence Not enough data
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Genome context
JH977683.1: 6854838-6854930 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from efu-mir-9283
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-9283

Accession MIMAT0034934
Description Eptesicus fuscus efu-miR-9283 mature miRNA
Sequence 11 - UGUGGCCUUGAAGCUGAGCGGAGGG - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545