miRBase entry: efu-mir-9229e-2

Stem-loop efu-mir-9229e-2

Accession

MI0028519

Description

Eptesicus fuscus efu-mir-9229e-2 precursor miRNA

Gene family

MIPF0001875; mir-9229

Sequence

guuuuggugcUCACUGAGUCUGCCCUUUGAgugugucacuuauggauguguagaguuauaaucugguauggucugaagcugu
(((((((..(..(((((.(((((((..((((((...)))))).))....))))).)).......)))..)..)))))))...

Structure

---       ug UC   -------  G     ----  UU      u 
   guuuugg  c  ACU       GA UCUGC    CC  UGAgug  
   |||||||  |  |||       || |||||    ||  |||||| g
   cgaaguc  g  ugg       uu agaug    gg  auucac  
ugu       ug ua   ucuaaua  g     ugua  -u      u

Annotation confidence Not enough data

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Genome context

JH977754.1: 847456-847537 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-9229e-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature efu-miR-9229e

Accession	MIMAT0034846
Description	Eptesicus fuscus efu-miR-9229e mature miRNA
Sequence	11 - UCACUGAGUCUGCCCUUUGA - 30
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545