miRBase entry: eca-mir-9180

Stem-loop eca-mir-9180


Accession
MI0028410
Description
Equus caballus eca-mir-9180 precursor miRNA


Sequence

17 reads, 3 reads per million, 1 experiments
cugcagggcugccugguggccacgucuggagccccuuuaagagguccccagccugugccuggggagggCUUGGACCUCUGAUGGGAGCCCAgaaacagccaccccuucuccgucaucucca
...((((....))))(((((....(((((.(((((....((((((((..(((((...((...)).))))).))))))))...))).)))))))....)))))...................

Structure
----cugcagggcugccug     cacg     a  -   uuua        cc     gug  u 
                   guggc    ucugg gc ccc    agaggucc  agccu   cc  
                   |||||    ||||| || |||    ||||||||  |||||   || g
                   caccg    agACC CG GGG    UCUCCAGG  UCggg   gg  
accucuacugccucuuccc     acaa     -  A   -UAG        -U     --a  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr19: 33436526-33436646 [+]

Database links

Mature eca-miR-9180

Accession MIMAT0034761
Description Equus caballus eca-miR-9180 mature miRNA
Sequence 69 - CUUGGACCUCUGAUGGGAGCCCA - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545