miRBase entry: eca-mir-3613

Stem-loop eca-mir-3613


Accession
MI0028389
Description
Equus caballus eca-mir-3613 precursor miRNA
Gene family
MIPF0001411; mir-3613


Sequence

47 reads, 7 reads per million, 1 experiments
ccggcgcgcaacacgaugguuggguuuggauuguuguacuuuuuuuuuuguucguugcauuuuuaggaACAAAAAAAAAAGCCCAACCCUUcacaccacuucauccgcaucucugaggacc
..((.(((......(((((...(((.((((..((((..(((((((((((((((.(.........).)))))))))))))))..))))..)))).)))...)))))))).))..........

Structure
--------cc  c   caacac     uug   u    uu    ua               g ugc 
          gg gcg      gaugg   ggu ugga  guug  cuuuuuuuuuuguuc u   a
          || |||      |||||   ||| ||||  ||||  ||||||||||||||| |   u
          cu cgc      cuacu   cca acUU  CAAC  GAAAAAAAAAACAag a   u
ccaggagucu  a   ------     uca   c    CC    CC               g uuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr17: 21184996-21185116 [+]

Database links

Mature eca-miR-3613

Accession MIMAT0034742
Description Equus caballus eca-miR-3613 mature miRNA
Sequence 69 - ACAAAAAAAAAAGCCCAACCCUU - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545