miRBase entry: eca-mir-9163

Stem-loop eca-mir-9163


Accession
MI0028387
Description
Equus caballus eca-mir-9163 precursor miRNA


Sequence

70 reads, 11 reads per million, 1 experiments
uaugaaaaauguaaggcuucaugacaucuguucuucucacUGCCCCAAGAAGCCUGGACUUGUGgguuuguggcucugcugugcacagguccuggcgucugggugcuggagagaaggacggguuacuccacugcggcagagca
.........(((...(((.((.((.(((((((((((((.((((((((.((.(((.(((((((((.(....((((...))))).))))))))).))).)))))).)).)).)))))))))))))...))...)).)))...)))

Structure
uaugaaaaa   aag   u  --u  --c             a  -  -    A  A   U         g uuug    u 
         ugu   gcu ca   ga   aucuguucuucuc cU GC CCCA GA GCC GGACUUGUG g    uggc  
         |||   ||| ||   ||   ||||||||||||| || || |||| || ||| ||||||||| |    |||| c
         acg   cgg gu   cu   ugggcaggaagag gg cg gggu cu cgg ccuggacac u    gucg  
---------   aga   c  cac  cau             a  u  u    -  g   u         g ----    u 


Annotation confidence Not enough data
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Genome context
chr17: 78381209-78381351 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-9163
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-9163

Accession MIMAT0034740
Description Equus caballus eca-miR-9163 mature miRNA
Sequence 41 - UGCCCCAAGAAGCCUGGACUUGUG - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545