miRBase entry: eca-mir-1543

Stem-loop eca-mir-1543


Accession
MI0028380
Description
Equus caballus eca-mir-1543 precursor miRNA
Gene family
MIPF0002080; mir-1543


Sequence

43 reads, 6 reads per million, 1 experiments
uuuugguguuguggcugaguaccuuugggcaguguuuugcaccucugagaguggaguaacuccuccuguggagUUGGUCCUAGUCUGGGUGCAAACaauuuauuucuguuagaaaaggacccugucuuaag
............(((.(.((.(((((.((((((((((.((((((...(((.((((.(((((((......))))))).))).).))))))))))))))........)))))...))))))).).))).....

Structure
uuuugguguugu   u a  a     --g     --------     u      cug   g -   g       uc 
            ggc g gu ccuuu   ggcag        uguuu gcaccu   aga u gga uaacucc  c
            ||| | || |||||   |||||        ||||| ||||||   ||| | ||| |||||||   
            cug c ca ggaaa   uuguc        aCAAA CGUGGG   UCU A CCU GUUgagg  u
-------gaauu   u c  -     aga     uuuauuua     -      ---   G U   G       ug 


Annotation confidence Not enough data
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Genome context
chr14: 37373334-37373464 [-]

Database links

Mature eca-miR-1543

Accession MIMAT0034733
Description Equus caballus eca-miR-1543 mature miRNA
Sequence 74 - UUGGUCCUAGUCUGGGUGCAAAC - 96
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545