Stem-loop eca-mir-9148

Accession

MI0028370

Description

Equus caballus eca-mir-9148 precursor miRNA

Sequence

17 reads, 0 reads per million, 1 experiments

gcuuuacagacugcagcggccaggggaggcUGAGGACCCGUGGCCUGAUCGCGGUuugcgccguuagccugaacagcagccgguacuuuagcagccgccaaacuuccauucuggccugccguuaa
........(((.(((..(((((((((((((((((((((...((((((.(((.((((.((...)).))))))).)))..)))))).)))))))..........)))))...))))))))).)))..

Structure

gcuuuaca   u   gc      ---     ----------       -   CGU   --   A   C    u  g 
        gac gca  ggccag   gggag          gcUGAGG ACC   GGC  CUG UCG GGUu gc  
        ||| |||  ||||||   |||||          ||||||| |||   |||  ||| ||| |||| || c
        uug cgu  ccgguc   ccuuc          cgauuuc ugg   ccg  gac agu ccga ug  
------aa   c   --      uua     aaaccgccga       a   ---   ac   a   -    u  c 

Annotation confidence Not enough data

Genome context

chr15: 38995662-38995786 [+]

Mature eca-miR-9148

• Accession: MIMAT0034724
• Description: Equus caballus eca-miR-9148 mature miRNA
• Sequence: 31 - UGAGGACCCGUGGCCUGAUCGCGGU - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545