Stem-loop eca-mir-9147

Accession

MI0028369

Description

Equus caballus eca-mir-9147 precursor miRNA

Sequence

36 reads, 2 reads per million, 1 experiments

ugacagggaccggcgcuguggccaaguaguUAGGUUUGCGCCCUCUGCUUUGGaggcccaggguuuugccgguucagauccugggcgcggaccuagcaccgcucaucaggccaugcuaggg
.........((...((.((((((.(((.(((((((((((((((((((..(((((((((...)))))..))))..))))....)))))))))))))))...))).....))))))))..)).

Structure

ugacaggga  ggc  u      ----a   --a               ----    CU    --     c 
         cc   gc guggcc     agu   guUAGGUUUGCGCCC    UCUG  UUGG  aggcc  
         ||   || ||||||     |||   |||||||||||||||    ||||  ||||  ||||| a
         gg   cg uaccgg     ucg   cgauccaggcgcggg    agac  ggcc  uuugg  
--------g  -au  -      acuac   cca               uccu    uu    gu     g 

Annotation confidence Not enough data

Genome context

chr15: 15528276-15528396 [+]

Mature eca-miR-9147

• Accession: MIMAT0034723
• Description: Equus caballus eca-miR-9147 mature miRNA
• Sequence: 31 - UAGGUUUGCGCCCUCUGCUUUGG - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545