miRBase entry: eca-mir-8908f-4

Stem-loop eca-mir-8908f-4


Accession
MI0028362
Description
Equus caballus eca-mir-8908f-4 precursor miRNA
Gene family
MIPF0001890; mir-8908


Sequence

28 reads, 4 reads per million, 1 experiments
cagugcugugugcaguguccUACUCAGAAAGGUACUGAUCACUuagaggacaaguagucacugccuuucuggguggacugaugcucaacaggaagaaccug
...(.(((((.(((..((((.(((((((((((((.((((.((((.......)))).)))).)))))))))))))))))...))).).)))).)........

Structure
-----cag g    - u   -gu    U             C    C    ag 
        u cugu g gca   gucc ACUCAGAAAGGUA UGAU ACUu  a
        | |||| | |||   |||| ||||||||||||| |||| ||||  g
        a gaca c cgu   cagg ugggucuuuccgu acug ugaa  g
guccaaga g    a u   agu    -             c    a    ca 


Annotation confidence Not enough data
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Genome context
chrX: 115868381-115868481 [-]
Clustered miRNAs
20 other miRNAs are < 10 kb from eca-mir-8908f-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8908f

Accession MIMAT0034701
Description Equus caballus eca-miR-8908f mature miRNA
Sequence 21 - UACUCAGAAAGGUACUGAUCACU - 43
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545