miRBase entry: eca-mir-8908c-3

Stem-loop eca-mir-8908c-3


Accession
MI0028360
Description
Equus caballus eca-mir-8908c-3 precursor miRNA
Gene family
MIPF0001890; mir-8908


Sequence

52 reads, 8 reads per million, 1 experiments
ggacugggcagauccuccacccugagccaugucaugugcagugcccugccgggaagguacugaucacuuagcauauguguAAUUAGUACCUGUCCGGGUAGAGUAaugcucaagaagaccaucauuuuuggagaccuucugccug
.....(((((((..(((((...(((......((.((.(((.(((.(((((.((((((((((((((((.........)))..)))))))))).))).))))).))).))).)).))......)))....)))))....))))))).

Structure
ggacu       --uc     -ccc   gccaug  a  u   g   c     g   -          --   uua 
     gggcaga    cucca    uga      uc ug gca ugc cugcc gga agguacugau  cac   g
     |||||||    |||||    |||      || || ||| ||| ||||| ||| ||||||||||  |||   c
     uccgucu    gaggu    acu      ag ac cgu AUG GAUGG CCU UCCAUGAUUA  gug   a
----g       ucca     uuuu   accaga  a  u   a   A     G   G          Au   uau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 115873249-115873393 [-]
Clustered miRNAs
15 other miRNAs are < 10 kb from eca-mir-8908c-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8908c

Accession MIMAT0034696
Description Equus caballus eca-miR-8908c mature miRNA
Sequence 81 - AAUUAGUACCUGUCCGGGUAGAGUA - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545