miRBase entry: eca-mir-514a

Stem-loop eca-mir-514a


Accession
MI0028357
Description
Equus caballus eca-mir-514a precursor miRNA
Gene family
MIPF0000130; mir-506


Sequence

3907 reads, 591 reads per million, 1 experiments
gcugugugcauuaccUCACUCCGGAAAGUGUCAAUCAUGUauaacuaaauaugauugacaccucugugaguggaguaacgccagcuauaugcaac
((((.(((..((((.((((((((((..(((((((((((((........))))))))))))).)))).)))))).)))))))))))..........

Structure
----------    u   ca    c      -    AA             aua 
          gcug gug  uuac UCACUC CGGA  GUGUCAAUCAUGU   a
          |||| |||  |||| |||||| ||||  |||||||||||||    
          cgac cgc  aaug ggugag gucu  cacaguuaguaua   c
caacguauau    -   --    a      u    -c             aau 


Annotation confidence Not enough data
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Genome context
chrX: 116750733-116750827 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from eca-mir-514a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-514a

Accession MIMAT0034715
Description Equus caballus eca-miR-514a mature miRNA
Sequence 16 - UCACUCCGGAAAGUGUCAAUCAUGU - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545