Stem-loop eca-mir-8908j

Accession

MI0028350

Description

Equus caballus eca-mir-8908j precursor miRNA

Gene family

MIPF0001890; mir-8908

Literature search

1 open access papers mention eca-mir-8908j
(1 sentences)

Sequence

13435 reads, 2034 reads per million, 1 experiments

gcuguguguggugccCUACCCGGAAGGUACUGAUCACCUAgccuaugugucauuaguaccugucuggguagaguaacucucaacaagaacaacau
..(((....(((((.(((((((((((((((((((.(((........).)).)))))))))).))))))))).)).)))....)))..........

Structure

--------gc   gugu   -  c         -          C  - UAg 
          ugu    ggu gc CUACCCGGA AGGUACUGAU AC C   c
          |||    ||| || ||||||||| |||||||||| || |    
          aca    uca ug gaugggucu uccaugauua ug g   c
uacaacaaga   acuc   a  a         g          c  u uau 

Annotation confidence Not enough data

Genome context

chrX: 115867008-115867102 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from eca-mir-8908j

Mature eca-miR-8908j

• Accession: MIMAT0034711
• Description: Equus caballus eca-miR-8908j mature miRNA
• Sequence: 16 - CUACCCGGAAGGUACUGAUCACCUA - 40
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545