Stem-loop eca-mir-514b

Accession

MI0028343

Description

Equus caballus eca-mir-514b precursor miRNA

Gene family

MIPF0000130; mir-506

Literature search

1 open access papers mention eca-mir-514b
(1 sentences)

Sequence

88 reads, 13 reads per million, 1 experiments

ucugugcgcaguaccCCAUUCCAGGAAGUGCCAAACAUGUggcuagauaaaugcuuggcaucucuuagagugagguaaugcacaacaaguacgac
..((((((...((((.(((((.((((.(((((((.(((............))).))))))).)))).))))).)))).))))))...........

Structure

---------uc      cag    C     C    A       A   GUggc 
           ugugcg   uacc CAUUC AGGA GUGCCAA CAU     u
           ||||||   |||| ||||| |||| ||||||| |||      
           acacgu   augg gugag uucu uacgguu gua     a
cagcaugaaca      --a    a     a    c       c   aauag 

Annotation confidence Not enough data

Genome context

chrX: 116800086-116800180 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-514b

Mature eca-miR-514b

• Accession: MIMAT0034706
• Description: Equus caballus eca-miR-514b mature miRNA
• Sequence: 16 - CCAUUCCAGGAAGUGCCAAACAUGU - 40
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545