miRBase entry: eca-mir-676

Stem-loop eca-mir-676


Accession
MI0028342
Description
Equus caballus eca-mir-676 precursor miRNA
Gene family
MIPF0000471; mir-676

Literature search
1 open access papers mention eca-mir-676
(1 sentences)

Sequence

115 reads, 17 reads per million, 1 experiments
gagacuucauguugguuccucaccagaaugcaugacucuucaaucucgggacucgcagaauuaauggaaugCCGUCCUAAGGUUGUUGAGUUcugcguuucugggcauuucaucucuguggggaagu
.............(.(((((((((((((((((.(((((..((((((.(((((..(((............))).))))).))))))..))))).)))).))))))..............))))))).)

Structure
gagacuucauguu g       --------------      -    u     uu      c     uc   gaauu 
             g uuccuca              ccagaa ugca gacuc  caaucu gggac  gca     a
             | |||||||              |||||| |||| |||||  |||||| |||||  |||      
             u aaggggu              ggucuu gcgu UUGAG  GUUGGA UCCUG  Cgu     a
------------- g       gucucuacuuuacg      u    c     UU      A     -C   aaggu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 51938828-51938954 [+]

Database links

Mature eca-miR-676

Accession MIMAT0034705
Description Equus caballus eca-miR-676 mature miRNA
Sequence 72 - CCGUCCUAAGGUUGUUGAGUU - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545